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Human immunodeficiency virus type 1 HIV-1 sequences that pre-date the recognition of AIDS are critical to defining the time of origin and the timescale of virus evolution 1 , 2. Other historically documented sequences, important calibration points to convert evolutionary distance into time, are lacking, however; ZR59 is the only one sampled prior to Phylogenetic analyses position this viral sequence DRC60 closest to the ancestral node of subtype A excluding A2.
Relaxed molecular clock analyses incorporating DRC60 and ZR59 date the M group’s most recent common ancestor near the beginning of the 20 th century. The recovery of viral gene sequences from decades-old paraffin-embedded tissues opens the door to a detailed paleovirological investigation of the evolutionary history of HIV-1 that is not accessible by other methods. Viral nucleic acids were extracted from this specimen using protocols optimized for the recovery of nucleic acids from ancient or degraded samples 3 , 4.
Sequences were reproducible after repeated extractions and not the result of PCR contamination see Fig. The results were confirmed independently in two laboratories Figs. The short fragments of the sample were found to be subtype A and not to be a mosaic of contemporary sequences see supplementary information for a detailed discussion of the authenticity of the sequences. Consensus nucleotide sequences from these short HIV-1 fragments were concatenated for study.
The analyses included reference sequences from the Los Alamos National Laboratory HIV sequence database and sequences recovered as part of this study from three paraffin-embedded tissue specimens collected from AIDS patients in Belgium and Canada between and HIV-1 sequences were analyzed in MrBayes v3. The phylogenetic analyses confirmed that the DRC60 consensus sequences from the two laboratories were derived from a single patient uncorrected pairwise distance 1.
The sequences were positioned close to the ancestral node of the subtype A lineage excluding sub-subtype A2 , forming a monophyletic clade with three modern sequences from the DRC Figs.
Congolese Civil War
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First Direct Radiocarbon Dating of Lower Congo Rock Art (Democratic Republic of the Congo). Geoffroy Heimlich, Pascale Richardin, Nathalie Gandolfo, Eric.
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Lower Congo rock art is concentrated in a region that stretches from Kinshasa to the Atlantic coast and from northern Angola to southern Congo-Brazzaville. Although Lower Congo rock art was identified as early as the 19th century, it had never been a subject of thorough investigation. Presently inhabited by the Ndibu, one of the Kongo subgroups, the Lovo Massif is situated north of the ancient Kongo Kingdom. With sites including 16 decorated caves , the massif has the largest concentration of rock art in the entire region.
In and , we were able to collect pigment samples directly on the panels of the newly discovered decorated cave of Tovo. Unlike the Sahara and southern Africa, both extensively prospected, rock art of central Africa is still widely unknown and not dated. Radiocarbon dating of rock art in Africa is a real challenge and only a few direct dates have been obtained thus far. After verifying that the pigment samples were indeed charcoal, we proceeded to 14C date them using accelerator mass spectrometry AMS.
The results indicate dates between cal AD and , confirming that the occupation of Tovo Cave was contemporaneous with the ancient Kongo Kingdom.